Logo

Package Documentation

  • Installation
    • How to Install:
  • cometspy package
    • Submodules
    • cometspy.comets module
      • comets
        • comets.get_biomass_image()
        • comets.get_flux_image()
        • comets.get_metabolite_image()
        • comets.get_metabolite_time_series()
        • comets.get_species_exchange_fluxes()
        • comets.run()
        • comets.set_classpath()
    • cometspy.layout module
      • layout
        • layout.add_barriers()
        • layout.add_external_reaction()
        • layout.add_model()
        • layout.add_typical_trace_metabolites()
        • layout.delete_model_files()
        • layout.display_current_media()
        • layout.get_model_ids()
        • layout.read_comets_layout()
        • layout.set_global_periodic_media()
        • layout.set_metabolite_diffusion()
        • layout.set_models_pairs_frictions()
        • layout.set_models_substrate_frictions()
        • layout.set_region_map()
        • layout.set_region_parameters()
        • layout.set_specific_metabolite()
        • layout.set_specific_metabolite_at_location()
        • layout.set_specific_metabolite_diffusion()
        • layout.set_specific_refresh()
        • layout.set_specific_refresh_at_location()
        • layout.set_specific_static()
        • layout.set_specific_static_at_location()
        • layout.update_models()
        • layout.write_layout()
        • layout.write_model_files()
        • layout.write_necessary_files()
    • cometspy.model module
      • model
        • model.add_convection_parameters()
        • model.add_light()
        • model.add_multitoxin()
        • model.add_multspecies_convmodel_parameters()
        • model.add_neutral_drift_parameter()
        • model.add_noise_variance_parameter()
        • model.add_nonlinear_diffusion_parameters()
        • model.add_signal()
        • model.change_bounds()
        • model.change_hill()
        • model.change_km()
        • model.change_optimizer()
        • model.change_vmax()
        • model.delete_comets_model()
        • model.ensure_sinks_are_not_exchanges()
        • model.get_bounds()
        • model.get_exchange_metabolites()
        • model.get_reaction_names()
        • model.load_cobra_model()
        • model.open_exchanges()
        • model.read_cobra_model()
        • model.read_comets_model()
        • model.write_comets_model()
    • cometspy.params module
      • params
        • params.get_param()
        • params.set_param()
        • params.show_params()
        • params.write_params()
    • cometspy.utils module
      • chemostat()
      • grow_rocks()
      • pick_random_locations()
    • Module contents
COMETSpy
  • Search

© Copyright 2023, The Segre Lab at Boston University.

Built with Sphinx using a theme provided by Read the Docs.